Prospects for using DNA barcoding to identify spiders in species-rich genera
نویسندگان
چکیده
While previous research has indicated the utility of DNA barcoding in identifying spider species sampled from a localized region, the eff ectiveness of this method over a broader geographic scale and with denser taxon sampling has not yet been extensively considered. Using both new and published data from 1801 individuals belonging to 361 morphospecies, this study examined intraand interspecifi c divergences for 19 genera that were each represented by at least 10 morphospecies. We particularly focused on increasing species-level sampling in order to better characterize levels of interspecifi c divergence within species-rich genera and to examine the prevalence of a “barcode gap” (discontinuity between intraand interspecifi c divergences). Overall, the mean intraspecifi c divergence value was found to be 2.15%, the average maximum intraspecifi c divergence was 3.16%, while the mean divergence between nearest interspecifi c neighbours was 6.77%, demonstrating the typical presence of a barcode gap. Of the 66% of morphospecies that formed monophyletic sequence clusters, the majority (92.5%) possessed a barcode gap. We also examine possible biological explanations for the large proportion of paraphyletic and polyphyletic clusters and discuss the need for further taxonomic investigations. Th e overlap between intraand interspecifi c divergences was not unexpected for some ‘species’, such as Pardosa groenlandica, since prior morphological studies have suggested that it is an example of a species complex. However, other cases of high intraspecifi c divergences may refl ect cryptic species diversity, indicating the need for a taxonomic approach that combines both morphological and molecular methods. Th e list of the species, COI sequences, and source references used in the analysis is published as a dataset under doi: 10.3897/zookeys.16.239.app.A.ds. Th e list of analyzed species, mean and maximum intraspecifi c divergences, distances to the nearest neighbouring species in its genus, general localities, and lifestyle characteristics is published as a dataset under doi: 10.3897/zookeys.16.239.app.B.ds.
منابع مشابه
Research Article: Molecular genetic divergence of five genera of cypriniform fish in Iran assessed by DNA barcoding
The present study represents a comprehensive molecular assessment of some family of freshwater fishes in Iran. We analyzed cytochrome oxidase I (COI) sequences for five genus of cypriniform fishes from Iran. The present investigation provides data on genetic structure of some species of Nemachilidae including Paraschistura bampurensis, Oxynoemacheilus kiabii and Turcinemacheilus saadii and Leuc...
متن کاملIdentification of Crocus sativus and its Adulterants from Chinese Markets by using DNA Barcoding Technique
Background: Saffron (Crocus sativus L.) is a common but very expensive herbal medicine. As an important traditional medicine, it has an outstanding effect in treating irregular and painful menstruation. Recently, the over-demand tendency of saffron results in an unusual phenomenon in the medicinal markets. Adulterants and saffron-like substitutes are intentionally mixed into medicinal markets a...
متن کاملHighlighting Astyanax Species Diversity through DNA Barcoding
DNA barcoding has been used extensively to solve taxonomic questions and identify new species. Neotropical fishes are found in a wide variety of shapes and sizes, with a large number of species yet to be described, many of which are very difficult to identify. Characidae is the most species-rich family of the Characiformes, and many of its genera are affected by taxonomic uncertainties, includi...
متن کاملDNA barcoding data resolve the status of the genus Arboricaria ( Araneae : Gnaphosidae )
An analysis of public DNA barcoding data confirms that the extraction of Arboricaria Bosmans, 2000 from the genus Micaria Westring, 1851 would require the division of Micaria into at least five (and probably more) individual genera, to restore the monophyly of Micaria sensu stricto. Such an excessive splitting of a homogenous and well-defined genus would be neither desirable nor practical, and ...
متن کاملNon-destructive DNA extraction methods that yield DNA barcodes in spiders
DNA barcodes are short sequences of nucleotides that differ from species to species (Hebert et al., 2003; Hebert & Gregory, 2005). DNA barcoding is very important in helping to reconstruct phylogenetic trees and to confirm the identity of threatened or endangered species in the wild. Additionally, it has become increasingly popular in the food industry to test the accuracy of the food being sol...
متن کامل